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Question: How to get all possible group pairings in cuffdiff- Main
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gravatar for edoade_2014
4.4 years ago by
edoade_2014 • 30
European Union
edoade_2014 • 30 wrote:

Hi,

I have 4 samples and followed the tophat, cufflinks, cuffmerge and cuffdiff workflow.  I merged the assembled transcripts (cufflinks) of all samples in cuffmerge and imported the merged gtf in cuffdiff flagging the 4 different conditions each with replicates. The analysis has been done in Main, the problem is that cuffdiff gave me only the pairwise comparison of 2 groups out of 4. How can I have all possible group pairings with cuffdiff in galaxy Main?

Thank you
rna-seq cuffdiff • 1.6k views
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modified 4.4 years ago • written 4.4 years ago by edoade_2014 • 30
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gravatar for edoade_2014
4.4 years ago by
edoade_2014 • 30
European Union
edoade_2014 • 30 wrote:

Hi,

Sorry I just realised all pairwise comparisons are all kept in the same file. 

Thanks
ADD COMMENT • link written 4.4 years ago by edoade_2014 • 30
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