Question: No options available in "ANNOVAR annotate VCF" by devteam
3.4 years ago by
christophe.habib • 340
christophe.habib • 340 wrote:
I am trying to configure ANNOVAR (the one by the Devteam) in galaxy to set the databases available for annotation. Here is what I made already :
- In the tool_data_table_conf.xml file I wrote the file path of annovar_index.loc.
- In the tool_dependencies.xml file I wrote the path of the folder containing annovar scripts
- And in annovar_index.loc I wrote just to test : "exac03 hg38 filter path_to_humandb"
On note, I also tried to give the full path to the .idx file corresponding to exac03 for hg38.
Unfortunately, when I reboot galaxy I still have "No options available" and I can't select exac03 as mentionned before.
I am pretty sure I miss something really important. Do I have to modify the wrapper to make these databases options available? What am I supposed to do to see the databases availables in the form.
Thank you for your help.
ADD COMMENT • link •modified 3.4 years ago • written 3.4 years ago by christophe.habib • 340