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• What free Galaxy instance has a working SNPEff and other annotation and VCF processing tools to process a human genome data?
  What free Galaxy instance has a working SNPEff and other annotation and VCF processing tools to p...
• How to install ANNOVAR (annotation software) manually on a Galaxy cloud instance?
  How to install ANNOVAR manually on a Galaxy cloud instance? Is it possible only via a toolshed?
• Variant Annotation In Galaxy
  Hallo Galaxy users, I would like to annotate variants (in vcf file) found in my bacterial genome...
• using snpEff via galaxy
  ı have A question about Annotating variants with SnpEff following this tutorial (https://galaxypr...
• What Galaxy tools can preprocess VCF file before running the SNPEff annotation process?
  What Galaxy tools can preprocess VCF file before running the SNPEff annotation process? We have t...
• Genome source from history in SnpEff
  Hello, I am using SnpEff in Galaxy to add variant information to my vcf file. Please let me ask 2...
• What to write in "Using reference genome" and "Annotation Regions"sections ?
  Hey, I am trying to use GATK through Galaxy and trying to call variants from my vcf file. "Selec...
• ANNOVAR annotate cuts short the VCF file ?
  I uploaded a standard VCF that contains 57651 lines (or 57471 lines variant data) and ran it with...
• SnpEff variant annotation
  Hello! I am trying to annotate variants (Human genome) by SnpEff annotate variants (Galaxy Versi...
• Bacterial genome annotation using annovar
  Hello, am writing my own pipeline in python in order to annotate bacterial genome MTB, am new in ...
• Annovar hg38 databases
  Hey, I was doing a tutorial For SNP detection. I was using the freebayes and VCFfilter using hg1...
• Empty VCF file returned by ANNOVAR on Galaxy
  Hi, I have a VCF file which I need to annotate through ANNOVAR. But when I use the ANNOVAR tab p...
• Need help with "SnpEff" tool
  Hi there, I'm trying to run SnpEff on Galaxy, but the only Genome that it gives me access to is ...
• No options available in "ANNOVAR annotate VCF" by devteam
  Hello everyone, I am trying to configure ANNOVAR (the one by the Devteam) in galaxy to set the d...
• Zygosity of mutations
  Hi all, While performing an analysis of NGS data I am not getting the column for mutation zygosit...
• SNPeff for date palm
  Now I get the  .VCF  file  from  Samtools  and   i want  to  annotate  My SNPs. i have choose to ...
• Need help with "SnpEff" tool
  hi i am trying to use snpeff on galaxy...i give vcf file but i dnt know in genome portion what i ...