Question: tophat running since 4 days
1
gravatar for ajmaninisha
3.1 years ago by
ajmaninisha30
Canada
ajmaninisha30 wrote:

Hi,

 

I am running my samples on galaxy.org and the tophat is running since 4 days kindly advise.

i have been running my samples but it never took so long to complete .

 

kindly advise

 

 

Thanks

Nisha

tophat 4 days • 672 views
ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by ajmaninisha30
0
gravatar for Jennifer Hillman Jackson
3.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The Stampede cluster experienced some issues this last week. Please see this post from our administrator Nate about the options. C: Problems with TopHat

Your job may or may not go through as-is, but follow his advice concerning the size of the job and which cluster to use (default could be a better choice). 

Best, Jen, Galaxy team

ADD COMMENTlink written 3.1 years ago by Jennifer Hillman Jackson25k
0
gravatar for ajmaninisha
3.1 years ago by
ajmaninisha30
Canada
ajmaninisha30 wrote:

Thankyou for your reply . I have been running tophat using default and as per the suggestion i have also used Stampede . The job on default source is running since 5 days and on Stampede it was running fine , my datasets were yellow yesterday but today again they are grey which indicates that it is waiting for run. Is that possible? Regarding memory quota i have checked my account and there is enough memory for this job.

 

 

Kindly advise

 

Nisha

ADD COMMENTlink written 3.1 years ago by ajmaninisha30

Hi,

Please delete those jobs and submit new ones directly to the Galaxy cluster. There is a dependency problem on Stampede with Tophat that we are investigating. Sorry for the inconvenience.

--nate

ADD REPLYlink written 3.1 years ago by Nate Coraor3.2k

Thankyou I have restarted the datasets .

ADD REPLYlink written 3.1 years ago by ajmaninisha30
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