Question: Iterating Over A Set Of Files
gravatar for Alex Quezada
8.3 years ago by
Alex Quezada30
Alex Quezada30 wrote:
Hello, I have a use case where the input to the workflow would be a directory (local to Galaxy instance) with a variable number of files in it. The workflow should iterate over all the files, running the workflow for each one sequentially. How would I got about doing this in galaxy? It's easy enough to write an input tool that takes a directory and outputs the files, but not sure how to make it iterate. Any ideas? ************************************************ Alex Quezada Software Developer Genome Science/Joint Genome Institute (B-6) Bioscience Division MS M888 Los Alamos National Laboratory Los Alamos, NM 87545 phone: (505) 606-2153 fax: (505) 665-3024 email: ************************************************
galaxy • 896 views
ADD COMMENTlink modified 8.3 years ago by Jennifer Hillman Jackson25k • written 8.3 years ago by Alex Quezada30
gravatar for Jennifer Hillman Jackson
8.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Alex, Workflows are designed to run on datasets that are first imported into Galaxy (not external directories of files). Once the datasets are imported, running each through the workflow is initiated individually. We do plan to support running a tool or workflow on a set of datasets in the future. Thanks, Jen Galaxy Team -- Jennifer Jackson
ADD COMMENTlink written 8.3 years ago by Jennifer Hillman Jackson25k
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