Hi, when I try running "Iterative Mapping" I get the following error. Please help!
Usage: samtools merge [-nr] [-h inh.sam] <out.bam> <in1.bam> <in2.bam> [...] Options: -n sort by read names -r attach RG tag (inferred from file names) -u uncompressed BAM output -f overwrite the output BAM if exist -1 compress level 1 -R STR merge file in the specified region STR [all] -h FILE copy the header in FILE to <out.bam> [in1.bam] Note: Samtools' merge does not reconstruct the @RG dictionary in the header. Users must provide the correct header with -h, or uses Picard which properly maintains the header dictionary in merging. open: No such file or directory [bam_sort_core] fail to open file /galaxy-repl/main/jobdir/020/446/20446985/working/combine.bam open: No such file or directory [main_samview] fail to open "sorted.bam" for reading. rm: cannot remove ‘/galaxy-repl/main/jobdir/020/446/20446985/working/combine.bam’: No such file or directory rm: cannot remove ‘/galaxy-repl/main/jobdir/020/446/20446985/working/sorted.bam’: No such file or directory