Question: paired input files for the workflow
gravatar for snehalbpatil87
2.7 years ago by
snehalbpatil8730 wrote:

Hello Everyone:

I am trying to implement workflow for the custom tool I developed inside galaxy . My tool has 2 input files one is treatment file and one is control. I am confused about how should I implement tht tool in galaxy

e.g i have 4 files input1,input2, chip1, chip2. 1. If I use input dataset option with chain like symbol it runs job with total 4 combinations (input1-chip1) (input1-chip2)(input2.chip1) (input-chip2) I only want (input1-chip1)(input-chip2)

I tried creating paired data but it gives me the error no bam paired data available .

How to run these 2 pairs in loops for workflow?

Thanks, SP

workflow multilple inputs • 673 views
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