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Question: Merge BAM files
1
gravatar for b.conway-campbell
3.5 years ago by
b.conway-campbell • 20
United Kingdom
b.conway-campbell • 20 wrote:

The Merge BAM files option is no longer available on NGS:Sam Tools. Where has it gone? How can I merge BAM files (repeat lanes data of RNA-SEQ) now? Any ideas? 
ngs sam tools merge bam files • 1.3k views
ADD COMMENT • link •
modified 3.5 years ago by Martin Čech ♦♦ 4.9k • written 3.5 years ago by b.conway-campbell • 20
2
gravatar for Martin Čech
3.5 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

You should be able to use the following tool to merge BAM files:

https://usegalaxy.org/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/0.0.1
ADD COMMENT • link written 3.5 years ago by Martin Čech ♦♦ 4.9k

When I try to merge BAM files I receive the following error

Fatal error: Exit code 127 ()
/galaxy-repl/main/jobdir/011/348/11348779/galaxy_11348779.sh: line 42: bamtools: command not found
ADD REPLY • link written 2.9 years ago by skasowitz • 70
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