I have BAM files from aligning paired end Illumina reads. I would like to merge the aligned sequences from each lane into a single BAM file. When I attempt to use bamtools on usegalaxy.org I am receiving the following error:
Fatal error: Exit code 127 () /galaxy-repl/main/jobdir/011/351/11351255/galaxy_11351255.sh: line 42: bamtools: command not found
Is there a different way I should go about merging the data from different lanes?