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Question: uploading .gz files
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gravatar for rgambhir
3.6 years ago by
rgambhir • 10
United States
rgambhir • 10 wrote:

Hi ,

I am new to Galaxy and Bioinformatics. I just got data after DNA NGS data. I have data from 2 individuals. I downloaded the data from the server. I got files named fastq.gz. I was trying to upload them to Galaxy but it says the files are too big. each file in my case are 2.1Gb and I did the paired-end sequencing on both the samples. Please let me know what is the best way going ahead

Thank you

Regards

RG 
galaxy • 1.2k views
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modified 3.6 years ago by Anton Nekrutenko ♦ 1.7k • written 3.6 years ago by rgambhir • 10
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gravatar for Anton Nekrutenko
3.6 years ago by
Anton Nekrutenko ♦ 1.7k
Penn State
Anton Nekrutenko ♦ 1.7k wrote:

You cannot upload large files through the browser due to inherent browser limitations. Use ftp upload instead as shown here https://vimeo.com/120972739

 

 
ADD COMMENT • link written 3.6 years ago by Anton Nekrutenko ♦ 1.7k

Hi Anton,

thanks for your quick response. I am using OS X 10.9.5. do I need to download the FTP server online in that case which one is good.

REgards

RG

Ratish Gambhira, DVM, MS, PhD, DACVM Instructor Dept. of Radiation Oncology Tulane Cancer Center Tulane University

ADD REPLY • link written 3.6 years ago by rgambhir • 10

Hello, The choice used by many, including myself, is FileZilla. Give this a try and see how it works for you. Best, Jen, Galaxy team

http://wiki.galaxyproject.org/Support#Loading_data

ADD REPLY • link written 3.6 years ago by Jennifer Hillman Jackson ♦ 25k
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