Question: Galaxy - Table Browser Fasta And Bef Format
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Rita Rebollo • 20 wrote:
Hello,
I got an unexpected scientific result from a simple "get data" from
UCSC table browser with galaxy. I have uploaded the mouse mm9 repeat
masker track with a filtering on repClass = LINE SINE LTR DNA
If I ask the output to be sequences, I will get 1 454 739 sequences,
but if I ask the same data to be retrieved as a BED format I get
roughly 3 600 000 which is the closest to the "summary/statiscs" of
the dataset (item count = 3 493 484). Why is there a difference
between the FASTA file and the BED file?
Thank you
Rita