Question: EMBL-EBI uploaded fastq data does not show up in drop-down list
0
gravatar for frederick.rehfeld
3.3 years ago by
Germany
frederick.rehfeld0 wrote:

I sucsessfully imported a fastq dataset from the EBI-SRA server. I know want to compute the quality statistics but the dataset does not show up in the dropdown menu for the Compute quality statistics. Old fastq datasets however are still selectable?!

Can anybody help?!

 

Many thanks in advance.

ADD COMMENTlink modified 3.3 years ago by Dannon Baker3.7k • written 3.3 years ago by frederick.rehfeld0
3
gravatar for Dannon Baker
3.3 years ago by
Dannon Baker3.7k
United States
Dannon Baker3.7k wrote:

Is the datatype of the imported data set to fastq or fastqsanger?

Compute Quality Statistics requires the specific format of fastqsanger, which you can set in the dataset attribute interface page (click the pencil icon on a dataset).

 

ADD COMMENTlink written 3.3 years ago by Dannon Baker3.7k

Thanks a lot  for the quick response!

I had to change the format to fastqsanger. It is working now!

ADD REPLYlink written 3.3 years ago by frederick.rehfeld0

Great!  To help others find this solution in the future, please mark the answer as "accepted", since it worked!

ADD REPLYlink written 3.3 years ago by Dannon Baker3.7k
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