I have installed some tools, but when I click on Galaxy logo and on Analyse data I see tools dissapearing and showing. In general I have to have 2 new groups of tools:
-NGS FASTQ manipulation
but I see these 2 cases randomly when I refrech the page on Galaxy logo or on Analyse data top button:
Statistics Graph/Display Data FASTQ Groomer convert between various FASTQ quality formats FASTQ Summary Statistics by column Clip adapter sequences Compute quality statistics Draw nucleotides distribution chart Barcode Splitter Rename sequences Draw quality score boxplot FASTQ to FASTA converter FASTA Width formatter Quality format converter (ASCII-Numeric) Length Distribution chart RNA/DNA converter Reverse-Complement Remove sequencing artifacts NGS mappers BLAT
On this one all FASTQ are appearing without group on the root menu, and mappers are missing (bowtie and tophat)
Statistics Graph/Display Data NGS FASTQ manipulations FastQC Read Quality reports FASTQ to FASTA converter Filter by quality Trim sequences Collapse sequences Cutadapt Remove adapter sequences from Fastq/Fasta Bowtie2 - map reads against reference genome Tophat Gapped-read mapper for RNA-seq data
Than I see FASTQ groupped but some missing, and mappers are again ungroupped.......