Question: Making Galaxy See Rpy And Numpy
gravatar for Rodolfo Aramayo
8.6 years ago by
Rodolfo Aramayo30 wrote:
People, I have installed Galaxy on my laptop following standard procedures I have installed R, NumPy and RPy via MacPorts yet Galaxy seems to complain it cannot connect to them == An error occurred running this job: Traceback (most recent call last): File "/Library/WebServer/Documents/galaxy_dist/tools/stats/", line 4, in <module> from rpy import * ImportError: No module named rpy == Any ideas/suggestions would be greatly appreciated Thanks Rodolfo Aramayo
galaxy • 1000 views
ADD COMMENTlink modified 8.6 years ago by Kanwei Li270 • written 8.6 years ago by Rodolfo Aramayo30
gravatar for Kanwei Li
8.6 years ago by
Kanwei Li270
Kanwei Li270 wrote:
Hi Rodolfo, You are probably not using the macports python to run galaxy... please check by entering "which python" in console. Thanks, Kanwei
ADD COMMENTlink written 8.6 years ago by Kanwei Li270
Hi Rodolfo, Using Rpy to interface Galaxy and R was not a good idea in my experience, when Rpy was used Galaxy seams to not be able to handle the interruption of a file being loaded (e.g network failure or refresh action in the browser) we solved the problem by using Popen instead. Regards, Jorge
ADD REPLYlink written 8.6 years ago by Jorge Andrade20
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