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Question: How to organize list of Tools on local galaxy
3
gravatar for jkoral
3.7 years ago by
jkoral • 100
United States
jkoral • 100 wrote:

I setup the local Galaxy server for our Bioinformatics group. After installing all of the tools they requested, everything just showed up in the left hand pane without any organization. Am I able to change that? I am an IT guy and am not familiar with the tools either. Can they be setup in their default group somehow?

Thanks in advance for any help you can provide.

 
galaxy integrated_tool_panel toolpanel • 1.7k views
ADD COMMENT • link •
modified 3.7 years ago • written 3.7 years ago by jkoral • 100
1

Thanks so much for your response. Any chance I can download an already completed copy of the integrated_tool_panel.xml file. Such as the one from the Main galaxy page?

Thanks.

ADD REPLY • link written 3.7 years ago by jkoral • 100
1

That is not a thing to do because you have a different tool&section set than the Main instance does which will create confusion in the all-different-confs-smartly-combined > integrated_tool_panel.xml logic.

ADD REPLY • link written 3.7 years ago by Martin Čech ♦♦ 4.9k

Thanks so much.

ADD REPLY • link written 3.7 years ago by jkoral • 100

I am surprised there is not a bigger demand for full-featured Galaxy instances with well organized tool panels

ADD REPLY • link written 3.7 years ago by Jeremy Leipzig • 50
2
gravatar for Martin Čech
3.7 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

In the time of installation you select/create the panel section you want the tool to be in (see https://www.dropbox.com/s/xpbxd8enbhkk71g/Screenshot%202015-03-03%2012.56.06.png?dl=0 ).

Later you can reorder the sections and tools within the section by modifying integrated_tool_panel.xml file. The file itself is generated dynamically from shed_tools_conf.xml, migrated_tools_conf.xml, and tool_conf.xml but it will mostly respect the order you enter in the integrated one.
ADD COMMENT • link written 3.7 years ago by Martin Čech ♦♦ 4.9k
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