Question: Unable To Download Files From Barcode Splitter (From Public Galaxy)
0
Poh Leng Chong • 10 wrote:
Hi,
I run Barcode Splitter (from public Galaxy server) and am unable to
download the text files generated by the barcode splitter, got an
error message which says '
Could not find 'FASTQ_Groomer_on_data_1__V1.txt' on the extra files
path /galaxy/main_pool/pool2/files/003/610/dataset_3610002_files/FASTQ
_Groomer_on_data_1__V1.txt.
The run was Ok (green colour) but yet i was unable to download the
text files. Could you please advise?
Also, I wonder if you could help regarding the local Galaxy.. I used
VirtualBox to install the local copy, and installed according to the
instructions as in the website, command as "hg clone https://...." The
setup was smooth and went OK. The problem starts when I run the local
Galaxy using real data. I could upload the files, but have problems
with the fastQC and barcode splitter, I could not proceed any further
since these two operations could not be run...The error messages are:
FastQC
An error occurred running this job: Traceback (most recent call
last):
File "/home/Desktop/galaxy-dist/tools/rgenetics/rgFastQC.py", line
141, in <module>
assert os.path.isfile(opts.executable),'##rgFastQC.py error - cannot
find executable %s' % opts.executable
AssertionError
Barcode Splitter
An error occurred running this job:
/home/Desktop/galaxy-
dist/tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh:
line 65: fastx_barcode_splitter.pl: command not found
gzip: stdout: Broken pipe
Can anyone help me please? I installed the local Galaxy but could not
proceed further. I then used the public Galaxy but could not download
the files....
Hope to hear from you. Thanks very much.
Best regards
Alicia
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modified 6.9 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
6.9 years ago by
Poh Leng Chong • 10
