Question: Unable To Download Files From Barcode Splitter (From Public Galaxy)
gravatar for Poh Leng Chong
6.9 years ago by
Poh Leng Chong10 wrote:
Hi, I run Barcode Splitter (from public Galaxy server) and am unable to download the text files generated by the barcode splitter, got an error message which says ' Could not find 'FASTQ_Groomer_on_data_1__V1.txt' on the extra files path /galaxy/main_pool/pool2/files/003/610/dataset_3610002_files/FASTQ _Groomer_on_data_1__V1.txt. The run was Ok (green colour) but yet i was unable to download the text files. Could you please advise? Also, I wonder if you could help regarding the local Galaxy.. I used VirtualBox to install the local copy, and installed according to the instructions as in the website, command as "hg clone https://...." The setup was smooth and went OK. The problem starts when I run the local Galaxy using real data. I could upload the files, but have problems with the fastQC and barcode splitter, I could not proceed any further since these two operations could not be run...The error messages are: FastQC An error occurred running this job: Traceback (most recent call last): File "/home/Desktop/galaxy-dist/tools/rgenetics/", line 141, in <module> assert os.path.isfile(opts.executable),' error - cannot find executable %s' % opts.executable AssertionError Barcode Splitter An error occurred running this job: /home/Desktop/galaxy- dist/tools/fastx_toolkit/ line 65: command not found gzip: stdout: Broken pipe Can anyone help me please? I installed the local Galaxy but could not proceed further. I then used the public Galaxy but could not download the files.... Hope to hear from you. Thanks very much. Best regards Alicia
galaxy • 1.2k views
ADD COMMENTlink modified 6.9 years ago by Jennifer Hillman Jackson25k • written 6.9 years ago by Poh Leng Chong10
gravatar for Jennifer Hillman Jackson
6.9 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Alicia, Would you please share with me the history on the public Main server that you are having trouble downloading the data from? Use "Options -> Share or Publish", generate the link or add my email as a shared user, and email the link or name of the history back to me directly. Thanks, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 6.9 years ago by Jennifer Hillman Jackson25k
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