Question: clip adapter sequences
0
gravatar for tali.mandel
3.6 years ago by
tali.mandel10
Hebrew University
tali.mandel10 wrote:

Hello,

I am trying to clip adapter sequences from fastq files, however when I open this tool it doesnt identify my fastq files in the "library to clip" window.

Any idea to help me?

Thanks

Tali

galaxy chip-seq • 1.0k views
ADD COMMENTlink modified 3.6 years ago • written 3.6 years ago by tali.mandel10
1
gravatar for mokona__modoki
3.6 years ago by
France
mokona__modoki10 wrote:

Hello

Did you check the format of the fastq file ? You have different quality encodings for fastq files... Try grooming your fastq file. I've had such problems and grooming usually did the trick.

By the way generaly the data you want to clip is fastq but the adapter sequences should be in a .fasta file. That's how I did it and it worked.

Hope it helps

 

ADD COMMENTlink modified 3.6 years ago • written 3.6 years ago by mokona__modoki10
0
gravatar for tali.mandel
3.6 years ago by
tali.mandel10
Hebrew University
tali.mandel10 wrote:

Thanks

I worked perfectly!

 

Tali

 

ADD COMMENTlink written 3.6 years ago by tali.mandel10
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