Question: Cloudman instance: Tophat error
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karmella.haynes • 40 wrote:
Hello community,
I am encountering the following error when I try to run Tophat Galaxy Version 0.9 within my Cloudman instance:
[bam_header_read] EOF marker is absent. The input is probably truncated. [bam_header_read] invalid BAM binary header (this is not a BAM file). [bam_index_core] Invalid BAM header.[bam_index_build2] fail to index the BAM file. Fatal error: Tool execution
My inputs are fastq.gz files that I trimmed (outside of Galaxy) with Trimmomatic, then uploaded as fastqsanger (Human hg19).
Am I using the wrong type of input?
Thank you for your help.
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modified 2.3 years ago
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Jennifer Hillman Jackson ♦ 25k
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written
2.3 years ago by
karmella.haynes • 40
