I am encountering the following error when I try to run Tophat Galaxy Version 0.9 within my Cloudman instance:
[bam_header_read] EOF marker is absent. The input is probably truncated. [bam_header_read] invalid BAM binary header (this is not a BAM file). [bam_index_core] Invalid BAM header.[bam_index_build2] fail to index the BAM file. Fatal error: Tool execution
My inputs are fastq.gz files that I trimmed (outside of Galaxy) with Trimmomatic, then uploaded as fastqsanger (Human hg19).
Am I using the wrong type of input?
Thank you for your help.