Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: How can I merge two single-end mapping data
0
gravatar for zhhxu9
4.2 years ago by
zhhxu9 • 0
Canada
zhhxu9 • 0 wrote:

Hi,

I am analysing my ChIP-Seq data which generated by paired-end sequencing. But due to some experimental issues. It is better to mapping both the R1 and R2 data in single-end way separately.

So I would like to know how can I combine two SAM or BAM files into one file and how can I get the mapping statistics (eg. mapped and unmapped percentage, unique and multiple mapped percentage...) from the combined file.

Thanks a lot.

Zhenhua
merge single end bowtie mapping chip-seq • 2.7k views
ADD COMMENT • link •
modified 4.2 years ago by Bjoern Gruening ♦ 5.1k • written 4.2 years ago by zhhxu9 • 0
1
gravatar for Bjoern Gruening
4.2 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

I may be completely wrong, but I would say that you can simply put both files together. To do this you can use the tool "Concatenate datasets tail-to-head".

Cheers,

Bjoern
ADD COMMENT • link written 4.2 years ago by Bjoern Gruening ♦ 5.1k

Thanks Bjoern, I will take a shot.

ADD REPLY • link written 4.2 years ago by zhhxu9 • 0
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 171 users visited in the last hour