4.4 years ago by
When the mm10 build was added, just the original 44 genomes listed were available. The complete set of 71 liftOver conversions from UCSC have been prepped, but have not been added to the public instance yet. We plan for this to be updated in the Aug-Sept time frame (along with other genome updates).
Meanwhile, the liftOver tool at the UCSC Genome Browser can be used, named "Batch Coordinate Conversion" (found under "Utilities) http://genome.ucsc.edu/cgi-bin/hgLiftOver. The input and output are plain text files in bed format. These are generally small and can be download from Galaxy, converted at UCSC, and then uploaded back into Galaxy quickly.
Best, Jen, Galaxy team