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Question: CummeRbund error in galaxy local
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gravatar for raj_262920
3.7 years ago by
raj_262920 • 20
Germany
raj_262920 • 20 wrote:

Hi

is there a protocol or tutorial that shows how to use CummerRbound after cuffdiff ? I downloaded all the 14 cuffdiff output files from the analysis in usegalaxy account and uploaded them to my local galaxy and tried to use CummeRBound to these data which shows an error ? It says no CummeRbund was detected even though i installed it through tool shed ?

Thanks
rna-seq galaxy • 897 views
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modified 3.7 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.7 years ago by raj_262920 • 20
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gravatar for Jennifer Hillman Jackson
3.7 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

It sounds as if the tool installation is problematic. Double check that you are using the latest version of the tool wrapper (2015-03-16) and Galaxy release. And be certain to install with managed dependencies (this is the default). If the tool install is still problematic, you can contact the tool authors through the Tool Shed when logged in (menu -> Repository Actions).

Best, Jen, Galaxy team
ADD COMMENT • link written 3.7 years ago by Jennifer Hillman Jackson ♦ 25k
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