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Question: Genome Of Interest Is Not Listed
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gravatar for Vikash Yadav
4.8 years ago by
Vikash Yadav • 10
United States
Vikash Yadav • 10 wrote:
Dear Sir/Maam I am using Galaxy for analysis of NGS data. I want to map the NGS data, but the genome of my interest (Arabidopsis thaliana) is not listed. So what i can do to mapp my data using galaxy. Waiting for your kind response Thanks & Regards Vikash -- * Vikash Kumar Yadav* *Senior Research Fellow,* *Plant Molecular Biology Lab,* *National Botanical Research Institute,* *Mobile- 090 261 190 92*
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modified 4.8 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.8 years ago by Vikash Yadav • 10
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gravatar for Jennifer Hillman Jackson
4.8 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Vikash, Their are two Arabidopsis thaliana genomes indexed for use with some tools on the public Galaxy instance at http://usegalaxy.org - and full indexes will be published in the near term. Arabidopsis_thaliana_TAIR10 Arabidopsis_thaliana_TAIR9 If you are using a local Galaxy, the indexes currently available can be created by you, or our version can be obtained from the rsync server. Instructions are here: https://wiki.galaxyproject.org/Admin/Data%20Integration https://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup If using the public Galaxy, you can use any genome with most tools as a custom reference genome right now, without waiting for us to index them. Instructions are here: https://wiki.galaxyproject.org/Support#Custom_reference_genome Hopefully this helps, Jen Galaxy team -- Jennifer Hillman-Jackson http://galaxyproject.org
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