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• Recover Lost History From Local Instance Of Galaxy
  Greetings, I am running galaxy locally (I believe it is distribution b258de1e6cea -- downloaded ...
• Issues On Rnaseq Since The Changeover
  My histories seem to be stopping their processing around the Tophat-cuffmerge steps since the cha...
• tophat running since 4 days
  Hi,   I am running my samples on galaxy.org and the tophat is running since 4 days kindly advis...
• All history panes perpetually loading
  Hi,  Over the past couple of days, I've been having trouble accessing my current histories in th...
• Galaxy Main unable to load files into history uploaded by FTP (and other general flakiness the past few days)
  Hello, I uploaded several RNA seq raw reads via FTP without any issues, but I have been unable to...
• cufflink and tophat queueing more than 24hrs
  cufflink queue is not working. I have been trying to run tophat and cufflink since last 2 days, n...
• Bowtie2 down since server update?
  My Bowtie2 jobs have been hanging since Friday 1/27/27, and new jobs remain in the queue indefini...
• Loading human hg38 onto local instance
  Dear Galaxy Team I have a Galaxy Instance loaded onto my computer and have been trying to create...
• Problem with loading histories
  I am taking the Coursera course "Genomic Data Science with Galaxy."  I noticed from the beginning...
• External links to datasets, histories, workflows at Galaxy Main https://usegalaxy.org undergoing an update -- OPEN
  *Admin edit*: Original title ***Galaxy hosted bigWig tracks disappeared in UCSC sessions*** Hell...
• cufflink jobs in queue for 3 days
  Hello, I had set up a cufflink job saturday morning. I thought it may have been an error on my e...
• The jobs have started to be running after 12 hours
  Hi, I tried to run a workflow for ChIP-seq analysis, added that in my current history since yeste...
• ChIP Seq Upload
  Hello, We uploaded some samples yesterday. So far 4 of the 6 samples have been loaded but the la...
• Library Features
  I have been working with the libraries and found some features that would make things much easier...
• Unable to use custom build/dbkey
  Hi! I'm using the public main Galaxy instance from a browser. Since Sunday morning, the Trackst...
• Gradual Loss of Connection to Galaxy
  Hello, I've been having a problem with the main Galaxy server for several weeks now. I will star...
• Galaxy Main Jobs Not Running?
  Hello, I was just wondering whether anyone could confirm whether the Galaxy Main server is curre...
• Cannot find files - Bowtie2 or Tophat
  Hello, I have loaded 16 fastq files - 15 of which were moved from another history, and 1 file wh...