Question: Software Post Alignment
gravatar for Ianiri, Giuseppe
5.7 years ago by
Ianiri, Giuseppe90 wrote:
Hello, I performed my mapping using tophat - cufflink - cuffmerge - cuffdiff. With the information I have for my analysis so far, I can reannotate wrong genes, check for correct splicing etc. However, I would like to perform some analysis post-alignment, like for example samples clustering, volcano plot, heat maps etc. I guess I can't do this kind of analysis with Galaxy (I am using the free version on line on my Windows laptop) since I haven't found anything in the tools section. Does anyone know a software that I could use in windows with the data obtained in Galaxy? Any suggestion is really appreciated. Regards, Giuseppe Giuseppe Ianiri, Ph.D. Division of Cell Biology and Biophysics School of Biological Sciences 5100 Rockhill Road University of Missouri-Kansas City Kansas City, MO 64110 Email:
rna-seq cuffmerge • 709 views
ADD COMMENTlink modified 5.7 years ago by Jeremy Goecks2.2k • written 5.7 years ago by Ianiri, Giuseppe90
gravatar for Jeremy Goecks
5.7 years ago by
Jeremy Goecks2.2k
Jeremy Goecks2.2k wrote:
Hi Giuseppe, You're probably looking for something like Cummerbund: which has a wrapper in the tool shed: This isn't on our public server yet, but it may be added in the future. You might look into using Galaxy Cloud, where you can add tools to your instance: Good luck, J.
ADD COMMENTlink written 5.7 years ago by Jeremy Goecks2.2k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 179 users visited in the last hour