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Question: Creating Trackhub and uploading data from Galaxy to CyVerse
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gravatar for utkarsh.kapoor
9 months ago by
utkarsh.kapoor • 50
University of Vienna, Austria
utkarsh.kapoor • 50 wrote:

Hi,

I want to create a trackhub for displaying all my data in UCSC Genome Browser. As suggested by UCSC, CyVerse would be a good platform to host my data. However, I need guidelines on how to send my data from my Galaxy account to CyVerse? I don't manage to locate the URLs of my uploaded BAM or created bigWig files that I want.

Any alternative web-hosts that can connect to UCSC are also welcome.

It would be great if someone can share any inputs to go about creating trackhubs.

Cheers,

Utkarsh
trackhub ucsc rna-seq cyverse • 322 views
ADD COMMENT • link •
modified 9 months ago by Jennifer Hillman Jackson ♦ 25k • written 9 months ago by utkarsh.kapoor • 50
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gravatar for Jennifer Hillman Jackson
9 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

UCSC is the best source for help with Track Hubs.

Galaxy export/download FAQ: https://galaxyproject.org/support/download-data/

The Galaxy download URL is available per-dataset in the Galaxy history. Some datasets have two links under the disc download icon. Example: BAM datasets have both .bam and .bam.bai, shown at 6:09 in the FAQ's linked video).

Hope that helps! Jen, Galaxy team
ADD COMMENT • link written 9 months ago by Jennifer Hillman Jackson ♦ 25k
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