Question: Problem with custom reference genome
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Philipp.rathert • 30 wrote:
Dear all,
on our local galaxy-docker-stable instance I would like to include additional reference genomes for bowtie to shorten the time for the users.
I downloaded fasta files for mm10 and GRCh38 uploaded to my history and tried to run the bowtie index builder from the local data --> run data manger tools section.
I cannot select the history fasta file to build an index although we can map against the same fasta using bowtie when we provide it in the history.
What am I missing?
Do I have to process the fasta before in any way?
Thank you very much for your help.
Cheers,
Philipp
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modified 2.7 years ago
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Jennifer Hillman Jackson ♦ 25k
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written
2.9 years ago by
Philipp.rathert • 30
