Question: Question About Megablast
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gravatar for shamsher jagat
6.6 years ago by
United States
shamsher jagat590 wrote:
I have a question about megablast, I want to megablast my seq: the databases mentioned include (against target databases): htgs27 nt27 wgs 09 phiX174 How can I find details about these databases and which one is human or mouse or may be best for my case. Thanks Vasu
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ADD COMMENTlink modified 6.6 years ago by Jennifer Hillman Jackson25k • written 6.6 years ago by shamsher jagat590
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gravatar for Jennifer Hillman Jackson
6.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Vasu, These databases contain sequences from all species in the divisions. The number indicates the release version. The actual source is: ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/ A description of each division's contents can be found at: http://www.ncbi.nlm.nih.gov/genbank The exception is this single-species genome: http://en.wikipedia.org/wiki/Phi_X_174 Hopefully this helps, Jen Galaxy team
ADD COMMENTlink written 6.6 years ago by Jennifer Hillman Jackson25k
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