Cloudman Launch Page

6.9 years ago by

mailing list • 840 wrote:

The page seems to be loading now but I think I'm getting some weird behavior on my started instance. None of the services except SGE started up, and I see this under cluster status log on the main page: * 19:57:11 - Retrieved file 'persistent_data.yaml' from bucket 'cm-31bf91*********22c1a276ece' to 'pd.yaml'. * 19:57:11 - Master starting * 19:57:11 - Completed initial cluster configuration. * 19:57:27 - PostgreSQL data directory '/mnt/galaxyData/pgsql/data' does not exist (yet?) * 19:57:27 - Prerequisites OK; starting service 'SGE' * 19:57:32 - Configuring SGE... * 19:57:41 - Successfully setup SGE; configuring SGE * 19:58:16 - Attaching volume 'vol-35*********58' to instance 'i-ee7e298c' as device '/dev/sdg3' failed. Exception: EC2ResponseError: 400 Bad Request InvalidVolume.ZoneMismatchThe volume 'vol-35d4f058' is not in the same availability zone as instance 'i-ee*********def-3ce4-4c41-8909-15e0*********6e15 * 19:59:16 - Cannot detach volume 'vol-35d4f058' in state 'available' * 20:00:17 - Cannot detach volume 'vol-35d4f058' in state 'available' # 20:01:19 - STATUS CHECK: File system named 'galaxyData' is not mounted. Error code 0 # 20:01:19 - Cannot start service 'Postgres' because prerequisites are not yet satisfied. # 20:01:19 - Cannot start service 'Galaxy' because prerequisites are not yet satisfied. # 20:01:19 - Saved file 'persistent_data.yaml' to bucket 'cm-31bf9*********9ff78a*********a276ece' # 20:01:19 - Trouble comparing local (/mnt/cm/post_start_script) and remote (post_start_script) file modified times: [Errno 2] No such file or directory: '/mnt/cm/post_start_script' # 20:01:24 - STATUS CHECK: File system named 'galaxyData' is not mounted. Error code 0 # 20:01:24 - PostgreSQL data directory '/mnt/galaxyData/pgsql/data' does not exist (yet?) # 20:01:41 - STATUS CHECK: File system named 'galaxyData' is not mounted. Error code 0 # 20:01:41 - PostgreSQL data directory '/mnt/galaxyData/pgsql/data' does not exist (yet?) # 20:01:57 - STATUS CHECK: File system named 'galaxyData' is not mounted. Error code 0 # 20:01:57 - PostgreSQL data directory '/mnt/galaxyData/pgsql/data' does not exist (yet?) # 20:02:14 - STATUS CHECK: File system named 'galaxyData' is not mounted. Error code 0 # 20:02:14 - PostgreSQL data directory '/mnt/galaxyData/pgsql/data' does not exist (yet?) (I masked some of the numbers in case they're sensitive)

ADD COMMENT • link written 6.9 years ago by mailing list • 840

It looks like you're trying to restart an existing cluster (same cluster name) that previously had galaxy included. Is this the case? If so, you'll need to start it in the same availability zone as the existing volumes.

ADD REPLY • link written 6.9 years ago by Dannon Baker ♦ 3.7k

Yes, I did use the same name. I thought once I terminated everything would be gone. So how do I make a "clean start"? Thanks, Greg

ADD REPLY • link written 6.9 years ago by mailing list • 840

In your AWS management console delete the s3 bucket containing the cluster information. In the s3 viewer, the .clusterName file reflects the name of the cluster. You'll probably also want to delete the EBS data volume associated with that cluster, though electing to keep this won't prevent starting a new cluster. These volume id's are in the persistent_data.yaml file in the primary bucket (that you're deleting). And then to avoid this in the future, when you want to permanently kill a cluster select the deletion option at cluster termination to remove the bucket and volumes permanently. -Dannon

ADD REPLY • link written 6.9 years ago by Dannon Baker ♦ 3.7k

Ok thanks. That makes sense. Maybe a separate issue but when I do the terminate option from within the CloudMan web interface it says it's terminating but nothing seems to happen. I still see the S3 bucket, the volumes, and the instance continues running. Thanks again for all the answers today. -Greg

ADD REPLY • link written 6.9 years ago by mailing list • 840

Actually nevermind on that. I think I just wasn't waiting long enough.

ADD REPLY • link written 6.9 years ago by mailing list • 840

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