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Question: Notify user when galaxy hangs
1
gravatar for ggeo1
2.3 years ago by
ggeo1 • 10
ggeo1 • 10 wrote:

Hello ,

I wanted to ask you if there is a way to notify user (by sending an email automatically) when for example galaxy hangs, or shows some kind of error which results in not running galaxy.

For example, I received :

paste.httpserver.ThreadPool WARNING 2016-07-28 02:52:22,971 Thread 140329206122240 hung (working on task for 117500 seconds)
paste.httpserver.ThreadPool WARNING 2016-07-28 02:52:22,972 Thread 140329189336832 hung (working on task for 117376 seconds)
paste.httpserver.ThreadPool WARNING 2016-07-28 02:52:22,974 Thread 140329172551424 hung (working on task for 75331 seconds)

and galaxy hang, I couldn't load the page.

Is there a way to get a notification when something like this happens?

Thanks!
notification galaxy • 631 views
ADD COMMENT • link •
modified 2.3 years ago by Martin Čech ♦♦ 4.9k • written 2.3 years ago by ggeo1 • 10
0
gravatar for Martin Čech
2.3 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

Which users would you like to notify and why? The fact Galaxy stops does not necessarily stop their jobs.
ADD COMMENT • link written 2.3 years ago by Martin Čech ♦♦ 4.9k

Does it matter why? :) .I just want to notify specific users by using their email.I know that it doesn't stop the jobs always.Is there a way to accomplish this?Thank you.

ADD REPLY • link written 2.3 years ago by ggeo1 • 10

check the reports pages (https://wiki.galaxyproject.org/Admin/UsageReports) and find out who is currently using galaxy and send them am e-mail....of course, you can also do this automatically by scripting against PostgreSQL database.

Hans-Rudolf

ADD REPLY • link written 2.3 years ago by Hotz, Hans-Rudolf • 1.8k

Ok, thanks , I will check.

ADD REPLY • link written 2.3 years ago by ggeo1 • 10

I was asking in order to better advise you as your question is not clear to me.

To the extent I understand what you want you can do:

  • Parsing the logs and looking for specific exceptions.
  • Watching the size of the logs.
  • Watching database hits.

However you have to do this outside of Galaxy as the Galaxy process cannot generally detect itself hanging.

ADD REPLY • link written 2.3 years ago by Martin Čech ♦♦ 4.9k

Ok, thanks for the suggestions.

ADD REPLY • link written 2.3 years ago by ggeo1 • 10
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