Question: Fastq Groomer Before Bwa Mapping ?
0
Praveen Raj Somarajan • 100 wrote:
All,
I'm wondering why do we need to convert Illumina FASTQ into sanger
using FastQ Groomer before mapping with BWA in galaxy. The lastest
version of BWA itself added -I option to use Illumina data directly.
What's your opinion on this?
Secondly, I found that "Map with BWA for Illumina" uses -I option in
the commandline during execution, even for sanger formatted reads. How
does it impact the results?
Thanks,
Raj
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modified 7.0 years ago
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Peter Cock • 1.4k
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written
7.0 years ago by
Praveen Raj Somarajan • 100
