Question: Snpeff: Html Report Is Not Displaying After Update
0
Praveen Raj Somarajan • 100 wrote:
Hi All,
I updated galaxy recently to the latest version. Everything looks
fine, except snpEff report html view. It was displaying properly (all
tables and summary values) before the update, but the summary values
are not displaying after the update. A sample screen-shot is attached
for your reference. Could you please figure out this issue?
When I ran the same on command line, the reports were generated
correctly. I assume, something (datatypes or preview) has changed by
the update. Please let me know the work around on this?
Secondly, as we know, snpEff also generates a gene-wise annotation
file along with other results, but somehow we cannot access this file
through Galaxy. Though we see the link in the html report, but it
seems the path is broken.
Let me know your suggestions.
Best,
Raj
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modified 6.8 years ago
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Jennifer Hillman Jackson ♦ 25k
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written
6.8 years ago by
Praveen Raj Somarajan • 100
