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Question: Processing Multiple Files
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gravatar for mark.rose@syngenta.com
4.8 years ago by
mark.rose@syngenta.com • 60
mark.rose@syngenta.com • 60 wrote:
Hello Is there a approved way to configure or otherwise use galaxy to process multiple files with a tool or workflow? Using FASTQ Groomer on dozens of files individually is excruciating. Thanks Mark This message may contain confidential information. If you are not the designated recipient, please notify the sender immediately, and delete the original and any copies. Any use of the message by you is prohibited.
galaxy • 911 views
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modified 4.8 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.8 years ago by mark.rose@syngenta.com • 60
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gravatar for Jennifer Hillman Jackson
4.8 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hi Mark, Use a workflow to make this simpler. Put as many steps that are redundant into the workflow then add an "Input" dataset to the beginning (this is the important part). In the workflow editor, the "input" dataset is located in tool list (left column), near the bottom. Then, when bringing up the workflow to run it, there will be a little multi-paged icon next the input dataset's label. See the png here: After choosing inputs, down the page where you click to execute the workflow there is checkbox option to send the results to a new history. This can come in handy sometimes when running on multiple dataset inputs, since it will sort the output into distinct histories for you. Not always wanted, but good to know about. Hopefully this helps, Jen Galaxy team Look for more here in the upcoming week: https://wiki.galaxyproject.org/Learn/AdvancedWorkflow -- Jennifer Hillman-Jackson http://galaxyproject.org
ADD COMMENT • link written 4.8 years ago by Jennifer Hillman Jackson ♦ 25k
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