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Question: Combine Data
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gravatar for dongdong zhaoweiming
7.0 years ago by
dongdong zhaoweiming • 110
dongdong zhaoweiming • 110 wrote:
Hi, Can galaxy combine lots of data into a single file using "cat"? I have a 2GB sam type data, but I can't upload it by URL under my condition, so I want to spilt it into three files and upload it to galaxy and then combine it? Thanks a lot!weimin zhao
galaxy • 845 views
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modified 7.0 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.0 years ago by dongdong zhaoweiming • 110
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gravatar for Jennifer Hillman Jackson
7.0 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Weimin, Instead of splitting up the file, using FTP with a desktop client would be a simpler solution. Please see: http://galaxyproject.org/wiki/Support#Trouble_loading_data If you do decide to split and merge anyway, Kevin pointed out the correct tool for the merge: "Concatenate datasets". Take care, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
ADD COMMENT • link written 7.0 years ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for Kevin Lam
7.0 years ago by
Kevin Lam • 70
Kevin Lam • 70 wrote:
Text Manipulation <http: main.g2.bx.psu.edu="" root="" tool_menu#=""> -> Concatenate datasets <http: main.g2.bx.psu.edu="" tool_runner?tool_id="cat1"> tail-to- head is the equivalent of cat :) btw galaxy also accepts gzipped files so you can upload it faster that way Cheers Kevin On 18 November 2011 16:40, dongdong zhaoweiming <
ADD COMMENT • link written 7.0 years ago by Kevin Lam • 70
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