I am registered with galaxy
http://main.g2.bx.psu.edu/. But I recently came across another link as
https://galaxy.jgi-psf.org/ . This has some very good applications
especially w.r.t to the genome assembly (MIRA, velvet), microbial
ecology (Mothur etc) and Stats/Graphing Tools. Overall this links
seems much better than the Main galaxy and fulfils the general
aspirations of a user. Is this link subscribed JGI and its
collaborators OR any one can be a part of it. Is there any version of
galaxy server wherein we can have these applications available for
public use. Thank you.
Post-Doctoral Research Scholar,
University of Tennesse
Tools like MIRA and Velvet can be extremely demanding to
run, so are "dangerous"/expensive to offer on a public Galaxy.
I don't know who exactly runs https://galaxy.jgi-psf.org/
and if they intend it to be available for external usage.
I wrote the MIRA wrapper for our in house use with viral
genomes (small enough not to be a big computational load)
and published it on the Galaxy toolshed for others to use
too in their own Galaxy servers. It is nice to see it being
used on https://galaxy.jgi-psf.org/ and it looks like they
have a pretty powerful cluster with big memory machines
with 500GB of RAM, which should cope with many MIRA
If you have a local Galaxy at your department/institute then
try asking them if they can install this and other tools of
interest for you.