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Question: Gatk
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gravatar for Muehlschlegel, Jochen D.,M.D.
7.1 years ago by
Muehlschlegel, Jochen D.,M.D. • 10
Muehlschlegel, Jochen D.,M.D. • 10 wrote:
Hi, Do you host GATK on the Galaxy server? If not, is there a way to call SNPs from NGS (RNA-seq) data using Galaxy ? Thanks Danny The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
galaxy • 783 views
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modified 7.1 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.1 years ago by Muehlschlegel, Jochen D.,M.D. • 10
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gravatar for Jennifer Hillman Jackson
7.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hi Danny, A beta GATK pipeline is available on our Test instance at: http://test.g2.bx.psu.edu/ Feedback about the tool suite is welcomed! Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
ADD COMMENT • link written 7.1 years ago by Jennifer Hillman Jackson ♦ 25k
Hi Danny, Yes, this options is included on the CuffDiff tool form as an option. Paired vs mate paired data questions would be best directed to the tool authors at tophat.cufflinks@gmail.com. Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
ADD REPLY • link written 7.1 years ago by Jennifer Hillman Jackson ♦ 25k
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