Question: Generate Pileup -V
0
gravatar for Matthew McCormack
7.4 years ago by
United States
Matthew McCormack • 60 wrote:
Is choosing 'Print only lines containing indels' in the 'Whether or not to print only output lines containing indels' drop down for Generate pileup, the same as the -v option in SAMTools pileup ? Matthew The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
samtools bam • 663 views
ADD COMMENT • link • modified 7.4 years ago by Kelly Vincent • 340 • written 7.4 years ago by Matthew McCormack • 60
0
gravatar for Kelly Vincent
7.4 years ago by
Kelly Vincent • 340
Kelly Vincent • 340 wrote:
Matthew, Galaxy's pileup samtools wrapper does not use -v at all. Setting the 'Whether or not to print only output pileup lines containing indels' option to 'Print only lines containing indels' sets -i. Thanks, Kelly
ADD COMMENT • link written 7.4 years ago by Kelly Vincent • 340
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 179 users visited in the last hour