Question: Generate Pileup -V
0
gravatar for Matthew McCormack
7.4 years ago by
United States
Matthew McCormack60 wrote:
Is choosing 'Print only lines containing indels' in the 'Whether or not to print only output lines containing indels' drop down for Generate pileup, the same as the -v option in SAMTools pileup ? Matthew The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
samtools bam • 663 views
ADD COMMENTlink modified 7.4 years ago by Kelly Vincent340 • written 7.4 years ago by Matthew McCormack60
0
gravatar for Kelly Vincent
7.4 years ago by
Kelly Vincent340
Kelly Vincent340 wrote:
Matthew, Galaxy's pileup samtools wrapper does not use -v at all. Setting the 'Whether or not to print only output pileup lines containing indels' option to 'Print only lines containing indels' sets -i. Thanks, Kelly
ADD COMMENTlink written 7.4 years ago by Kelly Vincent340
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 179 users visited in the last hour