Question: Regarding Perl Script
0
gravatar for Shambhavi Srivastava
6.7 years ago by
Shambhavi Srivastava20 wrote:
Hello all, I am a new to GALAXY and am trying to create my own workflow with my own scripts written in PERL and integrating it with few already available in GALAXY. I tried the basic example given in GALAXYwiki..the program about counting GC content. I followed all the steps mentioned but when I start my galaxy server I dont see myTools option and even the pre installed options like GetData and all dont appear on screen. What should I do...can anyone send me another or a step by step procedure of how can I run my programs. Thankss..
galaxy • 792 views
ADD COMMENTlink modified 6.7 years ago by Daniel Blankenberg ♦♦ 1.7k • written 6.7 years ago by Shambhavi Srivastava20
0
gravatar for Daniel Blankenberg
6.7 years ago by
Daniel Blankenberg ♦♦ 1.7k
United States
Daniel Blankenberg ♦♦ 1.7k wrote:
Hi Shambhavi, It sounds like your tool_conf.xml file is malformed. Check that you have proper quotes and that the tag open and close are all correct, etc. There are several programs out there that can validate xml files for you, you may wish to try to validate your xml file with one of those. Thanks for using Galaxy, Dan
ADD COMMENTlink written 6.7 years ago by Daniel Blankenberg ♦♦ 1.7k
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