I am working on a next generation sequencing dataset and can't seem to find a tool on Galaxy despite extensive searching that can handle degenerate primers. I would like to remove them from my dataset as part of the cleanup steps. Does anyone know of a tool that can do this? P.S. I program in Python (but also somewhat in Perl and R) so writing a script is a possibility, but I am running Galaxy to help with sharing data and analyses with collaborators.
Thanks so much!