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Question: my tools don't locate module install by conda in mulled environement
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gravatar for Justine.POLLET
5 months ago by
Justine.POLLET • 0
Justine.POLLET • 0 wrote:

Hello, i have a local instance of galaxy and have some perl tools in it . I am constrain to precise the mulled environment ( create by conda ) PATH in my tools script, if not i have an error like :

Can't locate xxxx.pm in @INC (you may need to install the xxx::xxx module)

But i have to find an another solution instead precise the path in my script because my tools will migrate in a development galaxy instance and then in a production galaxy instance.
perl mulled conda galaxy depenencies • 357 views
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modified 5 months ago by n.goue • 50 • written 5 months ago by Justine.POLLET • 0
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gravatar for n.goue
5 months ago by
n.goue • 50
n.goue • 50 wrote:

Hi,

One possible solution is to update the first line in the perl script by replacing #!/usr/bin/perl by #!/usr/bin/env perl

Check here for best practices : https://github.com/bgruening/coding_for_big_data

Cheers,
ADD COMMENT • link written 5 months ago by n.goue • 50
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gravatar for Jennifer Hillman Jackson
5 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

A question very similar yours was asked at the IUC Gitter channel a bit earlier. Maybe this is yours? If not, please join the conversation, the solution will likely be the same. https://gitter.im/galaxy-iuc/iuc?at=5b17e77935e25f3997535565

If you don't think these are the same, you could post a new question or follow up in that same thread and explain. I would normally suggest using the primary GalaxyProject Gitter channel here: https://gitter.im/galaxyproject/Lobby, but this conversation is going on right now in the other channel.

This has come up before and they can help. Jen, Galaxy team
ADD COMMENT • link written 5 months ago by Jennifer Hillman Jackson ♦ 25k
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