Question: Runtime Warning With Pysam Egg
0
Shantanu Pavgi • 40 wrote:
Hi,
I am getting following warning when I start the galaxy server. I am
using latest revision (50e249442c5a) of galaxy-dist. Am I missing
anything in the configuration here?
{{{
$ ./run.sh
/home/galaxy/.python-
eggs/pysam-0.4.1_kanwei_ae2bd50d9945-py2.6-linux-x86_64-ucs2.egg-
tmp/csamtools.so:6: RuntimeWarning: __builtin__.file size changed, may
indicate binary incompatibility
###t#|}#######b###############S#5#####D###i)#######[####x,m
###<#=####L########B###########q##.:######$2###rDM###E3A#########j###
python path is: /share/apps/galaxy/galaxy-dist-
50e249442c5a/eggs/numpy-1.3.0-py2.6-linux-x86_64-ucs2.egg,
/share/apps/galaxy/galaxy-dist-
50e249442c5a/eggs/pysam-0.4.1_kanwei_ae2bd50d9945-py2.6-linux-
x86_64-ucs2.egg, /share/apps/galaxy/galaxy-dist-
50e249442c5a/eggs/Whoosh-0.3.18-py2.6.egg, /share/apps/galaxy/galaxy-
dist-50e249442c5a/eggs/pycrypto-2.0.1-py2.6-linux-x86_64-ucs2.egg,
/share/apps/galaxy/galaxy-dist-50e249442c5a/eggs/python_lzo-1.08_2
.03_static-py2.6-linux-x86_64-ucs2.egg, /share/apps/galaxy/galaxy-
dist-50e249442c5a/eggs/bx_python-0.7.0_14b6a6c95da6-py2.6-linux-
x86_64-ucs2.egg, /share/apps/galaxy/galaxy-dist-
50e249442c5a/eggs/amqplib-0.6.1-py2.6.egg, /share/apps/galaxy/galaxy-
dist-50e249442c5a/eggs/pexpect-2.4-py2.6.egg, /share/apps/galaxy
/galaxy-dist-50e249442c5a/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg,/s
hare/apps/galaxy/galaxy-dist-50e249442c5a/eggs/Babel-0.9.4-py2.6.egg,
/share/apps/galaxy/galaxy-dist-50e249442c5a/eggs/Beaker-1.4-py2.6.egg,
/share/apps/galaxy/galaxy-dist-50e249442c5a/eggs/Mako-0.2.5-py2.6.egg,
/share/apps/galaxy/galaxy-dist-
50e249442c5a/eggs/WebHelpers-0.2-py2.6.egg, /share/apps/galaxy/galaxy-
dist-50e249442c5a/eggs/simplejson-2.1.1-py2.6-linux-x86_64-ucs2.egg,
/share/apps/galaxy/galaxy-dist-
50e249442c5a/eggs/wchartype-0.1-py2.6.egg, /share/apps/galaxy/galaxy-
dist-50e249442c5a/eggs/elementtree-1.2.6_20050316-py2.6.egg,
/share/apps/galaxy/galaxy-dist-
50e249442c5a/eggs/docutils-0.7-py2.6.egg, /share/apps/galaxy/galaxy-
dist-50e249442c5a/eggs/WebOb-0.8.5-py2.6.egg, /share/apps/galaxy
/galaxy-dist-50e249442c5a/eggs/Routes-1.12.3-py2.6.egg,
/share/apps/galaxy/galaxy-dist-50e249442c5a/eggs/Cheetah-2.2.2-py2.6
-linux-x86_64-ucs2.egg, /share/apps/galaxy/galaxy-dist-
50e249442c5a/eggs/PasteDeploy-1.3.3-py2.6.egg, /share/apps/galaxy
/galaxy-dist-50e249442c5a/eggs/PasteScript-1.7.3-py2.6.egg,
/share/apps/galaxy/galaxy-dist-50e249442c5a/eggs/Paste-1.6-py2.6.egg,
/share/apps/galaxy/galaxy-dist-50e249442c5a/lib,
/share/apps/galaxy/python/2.6.6/lib/python26.zip,
/share/apps/galaxy/python/2.6.6/lib/python2.6,
/share/apps/galaxy/python/2.6.6/lib/python2.6/plat-linux2,
/share/apps/galaxy/python/2.6.6/lib/python2.6/lib-tk,
/share/apps/galaxy/python/2.6.6/lib/python2.6/lib-old,
/share/apps/galaxy/python/2.6.6/lib/python2.6/lib-dynload,
/share/apps/galaxy/python/2.6.6/lib/python2.6/site-packages
galaxy.datatypes.registry DEBUG 2011-04-25 12:37:54,637
Loading datatypes from datatypes_conf.xml
galaxy.datatypes.registry DEBUG 2011-04-25 12:37:54,650 Loaded
display application 'ucsc_bam' for datatype 'bam', inherit=False
...
...
...
}}}
--
Thanks,
Shantanu.
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modified 7.6 years ago
by
Nate Coraor ♦ 3.2k
•
written
7.6 years ago by
Shantanu Pavgi • 40
