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Question: Running Galaxy With Sge
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gravatar for Chris Cole
10.1 years ago by
Chris Cole • 150
Chris Cole • 150 wrote:
Hi, I'm getting the following error when trying to run galaxy over our cluster (using the unified method): Exception: SGEJobRunner requires DRMAA_python which was not found I've got what I think is the right package from here: http://gridengine.sunsource.net/howto/drmaa_python.html But I'm getting a bit out of my depth here and it's asking about 'swig'. Can I just check that I'm not doing anything stupid and that I can run this DRMAA_python in user-space rather than globally while I get to grips with the set-up? Cheers, Chris.
galaxy • 826 views
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modified 10.1 years ago by Sean Davis • 220 • written 10.1 years ago by Chris Cole • 150
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gravatar for Sean Davis
10.1 years ago by
Sean Davis • 220
Sean Davis • 220 wrote:
Did you install the python DRMAA package? It is not a "script" but a set of libraries that allow python programs to interact with SGE. Sean
ADD COMMENT • link written 10.1 years ago by Sean Davis • 220
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gravatar for Nate Coraor
10.1 years ago by
Nate Coraor ♦ 3.2k
United States
Nate Coraor ♦ 3.2k wrote:
Hi Chris, You should be able to "scramble" DRMAA_python by setting SGE_ROOT and using our provided script: SGE_ROOT=/path/to/sge python scripts/scramble.py DRMAA_python Please let me know if this works for you. --nate
ADD COMMENT • link written 10.1 years ago by Nate Coraor ♦ 3.2k
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