Question: preparing input for cummerbund
gravatar for owjih
2.6 years ago by
owjih10 wrote:

Hello, I've exported cuffdiff results and extracted my own data from it, then I imported SQL format from data to galaxy but now I can't run cummerbund on my data and I'm getting Fatal error code 1 (). I wonder whether is possible to run cummerbund via uploaded data in the SQL format or not ?

rna-seq software error • 865 views
ADD COMMENTlink modified 2.5 years ago by Jennifer Hillman Jackson25k • written 2.6 years ago by owjih10
gravatar for Jennifer Hillman Jackson
2.5 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Importing and using SQLlite format data should be possible. This is a newly reported problem and we would like to investigate. Would you please submit the error as a bug report so we can review and troubleshoot?

Include a link to this Biostars post, leave all inputs/output undeleted, and send in the bug report using this method:

If you are not working at, try to see if you can reproduce the error there. If working somewhere else, there are many other factors that could contribute to an error. Testing on Galaxy Main will help with sorting those and we can follow up from there in email. (The bugs list is interval to the core team, so your data will remain private).

Thanks and we will get back to you via email with the results and post generalized help (if the problem is global) back here for others that may encounter the problem.

Thanks for reporting the issue, Jen, Galaxy team

ADD COMMENTlink written 2.5 years ago by Jennifer Hillman Jackson25k
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