I am attempting to assemble pair end read sequences with Spades. Spades have seemed to work, I have performed QUAST on the assembled sequence. I am following a manual that indicates that I need to download the QUAST file (Quast_report.html) and open in chrome. How do I download the QUAST report html file?
Click on the "eye" view icon in the upper right corner of a dataset to view it within Galaxy.
- Understanding the Analysis History https://galaxyproject.org/tutorials/histories/#summary-view
To download a dataset, expand the dataset and click on the "disc" icon.
- Downloading Data https://galaxyproject.org/support/download-data/
- Understanding the Analysis History https://galaxyproject.org/tutorials/histories/#expanded-view
If the view/display for Quast tool's HTML output is not working at the Galaxy server you are working on, then the administrators of that server need to mark the Quast tool's HTML output as "whitelisted". This is an admin level function under found under: Galaxy > Admin > Tool Management > Manage whitelist.
Thanks! Jen, Galaxy team