What you have right now is an archive that contains one or more files (your bam data). Unpack the archive then use FTP Upload to get the bam datasets into Galaxy. You only need to upload the
bam files not the
.bam.bai indexes. Galaxy will coordinate sort the data and create indexes.
- Unpack the archive. More details in this post or you can do your own web search with "unpack tgz" for much more online help.
- Use FTP to transfer the
bamdatasets to the target Galaxy server. Confirm the transfers are successful and complete.
- Use the Upload tool within Galaxy to move the FTP'd files into a history as datasets.
- Loading Data >> FTP Upload https://galaxyproject.org/ftp-upload/
Thanks! Jen, Galaxy team
do not think I expressed myself in the best way. I used Glaxy to remove the duplicate reads, after this process I obtained several BAM files, but I need to export to my computer. I tried to export history, but I could not, I had to leave the story accessible and I could not do that. I was able to download, but in tgz format. the problem is that I need to export to other software, but I can not get this format tgz, the software does not accept. Thanks