Hello Biostar members, I am currently taking a course and we have some homework in which we need to upload data and create a workflow. It seems every time I try to run the data there is an error, so I am hoping someone can help? This is what I need to accomplish: I have all ready converted the data to be inputted I need to align my data to the dog(canFam3) reference sequence and convert the alignments to Bam Format. Next remove PCR Duplicates from the merged Bam File After this I need perform SNP discovery using either samtools, Mpileup or freebays on the BAM file created Then sort for quality and create a flatfile It appears that the final output file needs to be a .vcf file. Also, Turn in a summary file Hope this makes sense and I appreciate any help
Heads up! This is a static archive of our support site. Please go to help.galaxyproject.org if you want to reach the Galaxy community. If you want to search this archive visit the Galaxy Hub search
Question: Help with genomics courese question
0
koylek • 0 wrote:
ADD COMMENT
• link
•
modified 24 months ago
by
Jennifer Hillman Jackson ♦ 25k
•
written
24 months ago by
koylek • 0
0
Jennifer Hillman Jackson ♦ 25k wrote:
Hello,
The maintenance activities at Galaxy Main (http://usegalaxy.org) are causing failures, including upload failures. Full details are here: https://biostar.usegalaxy.org/p/20733/#20743
I suggest waiting until the banner about maintenance on Main is removed before proceeding with the classwork.
Thanks, Jen, Galaxy team
Please log in to add an answer.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 16.09
Traffic: 175 users visited in the last hour