Question: Galaxy package(s) for gene expression
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gravatar for galaxyNewbie
6 weeks ago by
galaxyNewbie30
galaxyNewbie30 wrote:

Hello,

We have RNA-Seq sequences in bam format and would like to perform gene expression analysis for specific genes. The most important step for us is to prepare count matrices. Are there any packages available via galaxy that could perform this analysis?

ADD COMMENTlink modified 6 weeks ago by Jennifer Hillman Jackson25k • written 6 weeks ago by galaxyNewbie30
0
gravatar for Jennifer Hillman Jackson
6 weeks ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Both Featurecounts and HTseq-count are available in Galaxy.

The RNA-seq tutorials cover usage. https://galaxyproject.org/learn/

Thanks! Jen, Galaxy team

ADD COMMENTlink written 6 weeks ago by Jennifer Hillman Jackson25k
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