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• Ensembl numbers to gene symbols
  Hello, I performed RNA Seq analysis using DeSeq2. At the end of the analysis it got differential...
• Creating galaxy pages with Immport Data
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• How To Do An Go Enrichment Analysis In Galaxy?
  Hi everyone, I got a list of differentially expressed genes from my RNA-seq data. Is there a t...
• PtR differential expression analysis
  Is it possible to use/install PtR on a private Galaxy-Server? I have installed trinity (Rev. 22)...
• Identifying Genes
  I am very new to Galaxy. We have performed a comparative analysis between the transcriptomes of d...
• Raw Count Of Genes
  Dear all, I am a Phd student working on chicken genomics, with limited experience in the bio-inf...
• Ensembl numbers to gene symbols
  Hello, I already aks in a post this question: I performed RNA Seq analysis using DeSeq2. At th...
• Controlling for batch effects in RNA-Seq data
  Hi, I was hoping that someone might be able to give me some advice on adjusting or controlling f...
• Gene Ontology Help
  To Whom it May Concern: My name is Nicole McDaniels. I am a Ph.D. candidate at Syracuse Universi...
• trinity statistical analysis
  Hi I am new trinity user at usegalaxy. I used trinity to assemble my NGS data and received fasta ...
• cuff diff output
  HI, I want to use the gene differential expression output from cuffdiff for performing gene onto...
• Cuffdiff 2.2.1.5 error with cummeRbund SQlite. "Fatal error: Exit code 1 () -- use version 2.2.1.3 instead
  Hi, so as a disclaimer, I am very new to RNA seq analysis. I received the following error while r...
• Critical Feedback
  This student was more adventurous. I think he actually could do more of what he tried with more e...
• Display data summary from R code in my galaxy tool
  I have created a galaxy tool, which get the gene expression data. I want to do some gene express...
• Lost headers on Deseq analysis
  I performed Deseq analysis on galaxy and after getting the tabular file with the genes and p valu...
• cuffdiff output to gene enrichment analysis
  Hi all, I successfully ran my RNA-seq data through the entire tuxedo suite on galaxy. I would li...
• Error with cuffdiff
  Hi, I'm new to Galaxy and the tuxedo pipeline but have managed to get my data to the point where...
• RNA-seq Analysis after CuffDiff: Clustering, etc
  Hello -  I am very new to RNA-seq analysis and am trying to figure out my next steps. I ran Toph...
• Replicate Common Gene Names
  This is somewhat Galaxy related, but more of a general question. I did all of my mapping and ini...