Question: Blastn Q.
0
Todd Yilk • 50 wrote:
Hello all,
I'm using the blastn tool and Galaxy is generating this command
(pasting from the log file):
command is: perl /opt/galaxy/dev/galaxy_dist_dev_umma/tools/blast/psub
-l galaxy_normal.c --fasta /opt/galaxy/dev/galaxy_dist_dev_umma/databa
se/files/001/dataset_1377.dat --cat /opt/galaxy/dev/galaxy_dist_dev_um
ma/database/files/001/dataset_1378.dat blastn -query "/opt/galaxy/dev/
galaxy_dist_dev_umma/database/files/001/dataset_1377.dat" -db
"/house/blast_db/ncbi/nt/2011-01-11/nt" -task blastn -evalue 0.001
-out /opt/galaxy/dev/galaxy_dist_dev_umma/database/files/001/dataset_1
378.dat -outfmt "6"
It's failing in Galaxy and I get a "script psub: No such file" kind of
error running it at the command line ... I'm assuming psub here isn't
the Unix command. According to find, my Galaxy installation doesn't
have a galaxy_normal.c file either.
Is there something I didn't install?
Thanks,
- Todd Yilk
Software Developer
Los Alamos National Laboratory
