Similar posts • Search »

• Bed File Error
  Dear Galaxy users, I made a bed file from BAM for some farther analysis. Original BAM file could...
• There is a link to view human hg19 but not hg38 bed files using UCSC. Why?
  I am working my way through the Galaxy 101 tutorial. When I use hg19 data I have the option of vi...
• visualization cannot find binaries in normal galaxy path
  Hello, I am trying to configure trackster, however I keep getting errors about binaries not bein...
• "Viewing" excel files in local Galaxy
  Hi, On my own local instance of galaxy when I have an 'xlsx' file and click the eyeball to view ...
• Error Message with Galaxy Main Diffbind
  I know a similar problem has been posted before, but I could not comment on the original post: I...
• Conversion GFF(3) to BED
  I am uploading a gff file for Toxoplasma Tgondii (GT1) organism on galaxy and try to convert this...
• convert annovar in excel to vcf for igv viewing
  Hello, In an excel file I have the chromosome, start and stop positions, reference allele (Ref),...
• Bed To Wiggle?
  Is there an option to convert Bed file to wiggle file in Galaxy? Thanks
• Bed To Gff
  I am trying to use the galaxy "BED to GFF" function. The operation worked, but instead of giving...
• Displaying Bed Files In Ucsc
  Hello, I have a bed file in this format: chr# start end scores. I tried to view it in ucsc main...
• where can I get Info files for CummeRbund from Galaxy cuffdiff?
  Hello, I am working with CummeRbund package for Cuffdiff output. It is a great package that make...
• Importing Features From Biomart
  Hello, I would like to import features from BioMart into galaxy. However the 'embedded' BioMart ...
• Unable to view HTML FASTQC files at https://usegalaxy.org -- Please follow for updates
  Hello, I am unable to view all my old 'FASTQC **html** files' on the galaxy main server. There i...
• Suggestions for variant callers/ problem with BCF view
  Samtools mpileup only outputs genotypes fields for samples when a BCF output is selected. The BCF...
• Get Count of lines in a BED data file
  I simply want to get a count of rows in a Galaxy output BED file (in this case the number of gene...