Question: (Closed) convert annovar in excel to vcf for igv viewing
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galaxyNewbie • 30 wrote:
Hello, In an excel file I have the chromosome, start and stop positions, reference allele (Ref), alternate.(alt) and numerous annovar scores. How do I convert this excel into a .VCF file so that I can view it in IGV or another genomic viewer? Please let me know if I can provide any additional details. I also have Galaxy installed so I'm hoping I can install a galaxy package to do this conversion and viewing.
Thank you!
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