Question: (Closed) convert annovar in excel to vcf for igv viewing
gravatar for galaxyNewbie
7 months ago by
galaxyNewbie30 wrote:

Hello, In an excel file I have the chromosome, start and stop positions, reference allele (Ref), alternate.(alt) and numerous annovar scores. How do I convert this excel into a .VCF file so that I can view it in IGV or another genomic viewer? Please let me know if I can provide any additional details. I also have Galaxy installed so I'm hoping I can install a galaxy package to do this conversion and viewing.

Thank you!

format excel vcf igv annovar • 295 views
ADD COMMENTlink written 7 months ago by galaxyNewbie30

Hello galaxyNewbie!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.


PS: The conversion is not automatic, but some help is in the prior post about the same situation.
ADD REPLYlink written 7 months ago by Jennifer Hillman Jackson25k
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