Question: visualization cannot find binaries in normal galaxy path
0
gravatar for wrf
3.6 years ago by
wrf0
Germany
wrf0 wrote:

Hello,

I am trying to configure trackster, however I keep getting errors about binaries not being found "command not found" when they are in the PATH for the galaxy user.

All I can think of is that the temporary scripts from job_working_directory are generated without the PATH of the galaxy user (which has a few extra directories for galaxy-only binaries).

Where is the best place to configure this PATH?

Thanks!

path visualization • 694 views
ADD COMMENTlink modified 3.6 years ago by Hotz, Hans-Rudolf1.8k • written 3.6 years ago by wrf0
0
gravatar for Hotz, Hans-Rudolf
3.6 years ago by
Switzerland
Hotz, Hans-Rudolf1.8k wrote:

Hi

 

Have you tried adding the path to the "run.sh" script?

 

Regards, Hans-Rudolf

ADD COMMENTlink written 3.6 years ago by Hotz, Hans-Rudolf1.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 172 users visited in the last hour